Ji He's Weblog

For those who are reading my blog from time to time: sorry I was not able to update my posts for a long while, and sorry for those MSN messages / xyz invites with no response from myself, simply because I was too busy all year long -- that's the punishment for having another (cute) baby girl (Elly Jiayin He, DOB 03/08/2009) and accepting my new position earlier this year...

Whatsoever, I wish you a Merry Christmas and Happy New Year!

P.S. We still have two unfilled positions this year and next year we'll have another two new openings, if you are interested in working and living in the middle of nowhere, check our Employment Opportunities page.

Posted by Ji He at 4:13 PM | Permalink

Vagner A. Benedito, Haiquan Li, Xinbin Dai, Maren Wandrey, Ji He, Rakesh Kaundal, Ivone Torres-Jerez, S. Karen Gomez, Maria J. Harrison, Yuhong Tang, Patrick X. Zhao and Michael K. Udvardi. “Genomic inventory and transcriptional analysis of Medicago truncatula transporters”. Plant Physiology. 2009. Accepted for publication.

Online Open Access | PDF (716K) | BibTEX (benedito09genomic)

Posted by Ji He at 4:09 PM | Permalink

Ji He, Vagner A. Benedito, Mingyi Wang, Jeremy D. Murray, Patrick X. Zhao, Yuhong Tang and Michael K. Udvardi. “The Medicago truncatula gene expression atlas web server”. BMC Bioinformatics. 2009, 10:441

BMC Open Access | PDF (1.1M) | BibTEX (he09bmcbioinfo)

Also check the MtGEA web server.

Posted by Ji He at 4:06 PM | Permalink

M. David Marks, Li Tian, Jonathan P. Wenger, Stephanie N. Omburo, Wilfredo Soto-Fuentes, Ji He, David R. Gang, George D. Weiblen and Richard A. Dixon. “Identification of candidate genes affecting {Delta}9-tetrahydrocannabinol biosynthesis in Cannabis sativa”. Journal of Experimental Botany. 2009. Accepted for publication. Online advance access available.

JXB Advance Access | PDF (620K) | BibTEX (marks09identification)

Posted by Ji He at 2:09 PM | Permalink

Li Tian, Gregory J Peel, Zhentian Lei, Naveed Aziz, Xinbin Dai, Ji He, Bonnie Watson, Patrick X Zhao, Lloyd W Sumner and Richard A Dixon. “Transcript and proteomic analysis of developing white lupin (Lupinus albus L.) roots”. BMC Plant Biology. 9:1, 2009.

BMC Open Access | PDF (1.1M) | BibTEX (tian09transcript)

Posted by Ji He at 9:51 AM | Permalink

Mike Guether, Raffaella Balestrini, Matthew Hannah, Ji He, Michael Udvardi, and Paola Bonfante. “Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus”. New Phytologist. 182(1):200 -- 212, 2009.

New Phytologist | PDF (707K) | BibTEX (guether09genome)

Posted by Ji He at 1:35 PM | Permalink

Guodong Wang, Li Tian, Naveed Aziz, Pierre Broun, Xinbin Dai, Ji He, Andrew King, Patrick Zhao and Richard A. Dixon. “Terpene biosynthesis in glandular trichomes of hop (Humulus lupulus L.)”. Plant Physiology. 148:1254--1266, 2008.

Plant Physiology | PDF (970K) | BibTEX (wang08terpene)

Posted by Ji He at 8:53 AM | Permalink

Yan Zhang, Ji He, Patrick X Zhao, Joseph H Bouton and Maria J Monteros. “Genome-wide Identification of Microsatellites in White Clover (Trifolium repens L.) using FIASCO and phpSSRMiner”. Plant Methods. 4:19, 2008.

BMC Open Access | PDF (313K) | BibTEX (zhang08genome)

Posted by Ji He at 9:35 AM | Permalink

Ji He. “Improving Feature Representation of Natural Language Gene Functional Annotations Using Automatic Term Expansion”. In the Proceedings of the IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). 2008. p173-179.

PDF (662K) | BibTEX (he08cibcb)

Posted by Ji He at 2:04 PM | Permalink

Posted by Ji He at 6:56 PM | Permalink

Posted by Ji He at 6:31 PM | Permalink

Vagner Benedito, Ivone Torez-Jerez, Jeremy Murray, Andry Andriankaja, Stacey Allen, Klementina Kakar, Maren Wandrey, Jerome Verdier, Helene Zuber, Thomas Ott, Sandra Moreau, Andreas Niebel, Tancred Frickey, Georg Weiller, Ji He, Xinbin Dai, Patrick Zhao, Yuhong Tang, and Michael Udvardi. “A gene expression atlas of the model legume Medicago truncatula”. The Plant Journal. 55(3):504 -- 513, 2008.

Also check out the Mt Gene Expression Atlas web server.

Cover Article @ Blackwell Publishing | PDF (754K) | BibTEX (benedito08gene)

Posted by Ji He at 10:48 AM | Permalink

Honey Due Melon	Watermelon	Tomato
Towel Gourd	Cucumber	Banana Pepper

Posted by Ji He at 9:58 PM | Permalink

Recover Files is an award winning program that can undelete / recover deleted files after they have been deleted.

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Link

Posted by Ji He at 6:46 PM | Permalink

MA Rouf Mian, Yan Zhang, Zeng-Yu Wang, Ji-Yi Zhang, Xiaofei Cheng, Lei Chen, Konstantin Chekhovskiy, Xinbin Dai, Chunhong Mao, Foo Cheung, Xuechun Zhao, Ji He, Angela D Scott, Christopher D Town and Gregory D May. “Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages”. BMC Plant Biology. 8:27, 2008.

BMC Open Access | PDF (517K) | BibTEX (mian08analysis)

Posted by Ji He at 11:25 AM | Permalink