Ji He's Weblog tag:www.jihe.net,2010://1 2009-12-18T22:31:23Z Movable Type 3.31 Merry Christmas and Happy New Year tag:www.jihe.net,2009://1.148 2009-12-18T22:13:27Z 2009-12-18T22:31:23Z For those who are reading my blog from time to time: sorry I was not able to update my posts for a long while, and sorry for those MSN messages / xyz invites with no response from myself, simply... Ji He http://www.jihe.net For those who are reading my blog from time to time: sorry I was not able to update my posts for a long while, and sorry for those MSN messages / xyz invites with no response from myself, simply because I was too busy all year long -- that's the punishment for having another (cute) baby girl (Elly Jiayin He, DOB 03/08/2009) and accepting my new position earlier this year...

Whatsoever, I wish you a Merry Christmas and Happy New Year!

P.S. We still have two unfilled positions this year and next year we'll have another two new openings, if you are interested in working and living in the middle of nowhere, check our Employment Opportunities page.

]]> benedito09genomic tag:www.jihe.net,2009://1.147 2009-12-18T22:09:54Z 2009-12-19T02:36:59Z Vagner A. Benedito, Haiquan Li, Xinbin Dai, Maren Wandrey, Ji He, Rakesh Kaundal, Ivone Torres-Jerez, S. Karen Gomez, Maria J. Harrison, Yuhong Tang, Patrick X. Zhao and Michael K. Udvardi. “Genomic inventory and transcriptional analysis of Medicago truncatula transporters”. Plant... Ji He http://www.jihe.net Vagner A. Benedito, Haiquan Li, Xinbin Dai, Maren Wandrey, Ji He, Rakesh Kaundal, Ivone Torres-Jerez, S. Karen Gomez, Maria J. Harrison, Yuhong Tang, Patrick X. Zhao and Michael K. Udvardi. “Genomic inventory and transcriptional analysis of Medicago truncatula transporters”. Plant Physiology. 2009. Accepted for publication.

Online Open Access | PDF (716K) | BibTEX (benedito09genomic)

]]> he09bmcbioinfo tag:www.jihe.net,2009://1.146 2009-12-18T22:06:13Z 2010-01-15T22:22:50Z Ji He, Vagner A. Benedito, Mingyi Wang, Jeremy D. Murray, Patrick X. Zhao, Yuhong Tang and Michael K. Udvardi. “The Medicago truncatula gene expression atlas web server”. BMC Bioinformatics. 2009, 10:441 BMC Open Access | PDF (1.1M) | BibTEX... Ji He http://www.jihe.net Ji He, Vagner A. Benedito, Mingyi Wang, Jeremy D. Murray, Patrick X. Zhao, Yuhong Tang and Michael K. Udvardi. “The Medicago truncatula gene expression atlas web server”. BMC Bioinformatics. 2009, 10:441

BMC Open Access | PDF (1.1M) | BibTEX (he09bmcbioinfo)

Also check the MtGEA web server.

]]> marks09identification tag:www.jihe.net,2009://1.145 2009-09-01T20:09:12Z 2009-09-01T20:17:22Z M. David Marks, Li Tian, Jonathan P. Wenger, Stephanie N. Omburo, Wilfredo Soto-Fuentes, Ji He, David R. Gang, George D. Weiblen and Richard A. Dixon. “Identification of candidate genes affecting {Delta}9-tetrahydrocannabinol biosynthesis in Cannabis sativa”. Journal of Experimental Botany. 2009.... Ji He http://www.jihe.net M. David Marks, Li Tian, Jonathan P. Wenger, Stephanie N. Omburo, Wilfredo Soto-Fuentes, Ji He, David R. Gang, George D. Weiblen and Richard A. Dixon. “Identification of candidate genes affecting {Delta}9-tetrahydrocannabinol biosynthesis in Cannabis sativa”. Journal of Experimental Botany. 2009. Accepted for publication. Online advance access available.

JXB Advance Access | PDF (620K) | BibTEX (marks09identification)

]]> tian09transcript tag:www.jihe.net,2009://1.144 2009-01-05T15:51:43Z 2009-01-26T17:32:37Z Li Tian, Gregory J Peel, Zhentian Lei, Naveed Aziz, Xinbin Dai, Ji He, Bonnie Watson, Patrick X Zhao, Lloyd W Sumner and Richard A Dixon. “Transcript and proteomic analysis of developing white lupin (Lupinus albus L.) roots”. BMC Plant Biology.... Ji He http://www.jihe.net Li Tian, Gregory J Peel, Zhentian Lei, Naveed Aziz, Xinbin Dai, Ji He, Bonnie Watson, Patrick X Zhao, Lloyd W Sumner and Richard A Dixon. “Transcript and proteomic analysis of developing white lupin (Lupinus albus L.) roots”. BMC Plant Biology. 9:1, 2009.

BMC Open Access | PDF (1.1M) | BibTEX (tian09transcript)

]]> guether09genome tag:www.jihe.net,2008://1.143 2008-11-12T19:35:28Z 2009-04-06T20:49:58Z Mike Guether, Raffaella Balestrini, Matthew Hannah, Ji He, Michael Udvardi, and Paola Bonfante. “Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus”. New Phytologist. 182(1):200 -- 212, 2009. New Phytologist |... Ji He http://www.jihe.net Mike Guether, Raffaella Balestrini, Matthew Hannah, Ji He, Michael Udvardi, and Paola Bonfante. “Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus”. New Phytologist. 182(1):200 -- 212, 2009.

New Phytologist | PDF (707K) | BibTEX (guether09genome)

]]> wang08terpene tag:www.jihe.net,2008://1.142 2008-09-02T14:53:40Z 2008-11-09T17:55:14Z Guodong Wang, Li Tian, Naveed Aziz, Pierre Broun, Xinbin Dai, Ji He, Andrew King, Patrick Zhao and Richard A. Dixon. “Terpene biosynthesis in glandular trichomes of hop (Humulus lupulus L.)”. Plant Physiology. 148:1254--1266, 2008. Plant Physiology | PDF (970K) |... Ji He http://www.jihe.net Guodong Wang, Li Tian, Naveed Aziz, Pierre Broun, Xinbin Dai, Ji He, Andrew King, Patrick Zhao and Richard A. Dixon. “Terpene biosynthesis in glandular trichomes of hop (Humulus lupulus L.)”. Plant Physiology. 148:1254--1266, 2008.

Plant Physiology | PDF (970K) | BibTEX (wang08terpene)

]]> zhang08genome tag:www.jihe.net,2008://1.141 2008-07-10T15:35:12Z 2008-08-19T17:57:29Z Yan Zhang, Ji He, Patrick X Zhao, Joseph H Bouton and Maria J Monteros. “Genome-wide Identification of Microsatellites in White Clover (Trifolium repens L.) using FIASCO and phpSSRMiner”. Plant Methods. 4:19, 2008. BMC Open Access | PDF (313K) | BibTEX... Ji He http://www.jihe.net Yan Zhang, Ji He, Patrick X Zhao, Joseph H Bouton and Maria J Monteros. “Genome-wide Identification of Microsatellites in White Clover (Trifolium repens L.) using FIASCO and phpSSRMiner”. Plant Methods. 4:19, 2008.

BMC Open Access | PDF (313K) | BibTEX (zhang08genome)

]]> he08cibcb tag:www.jihe.net,2008://1.140 2008-06-03T20:04:04Z 2008-09-22T18:40:48Z Ji He. “Improving Feature Representation of Natural Language Gene Functional Annotations Using Automatic Term Expansion”. In the Proceedings of the IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). 2008. p173-179. PDF (662K) | BibTEX (he08cibcb)... Ji He http://www.jihe.net Ji He. “Improving Feature Representation of Natural Language Gene Functional Annotations Using Automatic Term Expansion”. In the Proceedings of the IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). 2008. p173-179.

PDF (662K) | BibTEX (he08cibcb)

]]> Clementis and Honeysuckle Flowers tag:www.jihe.net,2008://1.139 2008-04-23T00:56:18Z 2008-04-23T01:00:01Z Ji He http://www.jihe.net ]]> Blooming Muscari Flowers tag:www.jihe.net,2008://1.138 2008-03-24T00:31:55Z 2008-03-24T00:38:29Z Ji He http://www.jihe.net ]]> benedito08gene tag:www.jihe.net,2008://1.137 2008-03-13T16:48:33Z 2008-09-12T19:35:48Z Vagner Benedito, Ivone Torez-Jerez, Jeremy Murray, Andry Andriankaja, Stacey Allen, Klementina Kakar, Maren Wandrey, Jerome Verdier, Helene Zuber, Thomas Ott, Sandra Moreau, Andreas Niebel, Tancred Frickey, Georg Weiller, Ji He, Xinbin Dai, Patrick Zhao, Yuhong Tang, and Michael Udvardi. “A... Ji He http://www.jihe.net Vagner Benedito, Ivone Torez-Jerez, Jeremy Murray, Andry Andriankaja, Stacey Allen, Klementina Kakar, Maren Wandrey, Jerome Verdier, Helene Zuber, Thomas Ott, Sandra Moreau, Andreas Niebel, Tancred Frickey, Georg Weiller, Ji He, Xinbin Dai, Patrick Zhao, Yuhong Tang, and Michael Udvardi. “A gene expression atlas of the model legume Medicago truncatula”. The Plant Journal. 55(3):504 -- 513, 2008.

Also check out the Mt Gene Expression Atlas web server.

Cover Article @ Blackwell Publishing | PDF (754K) | BibTEX (benedito08gene)

]]> The Beauty of Seedlings tag:www.jihe.net,2008://1.136 2008-02-27T03:58:45Z 2008-03-26T03:48:12Z Ji He http://www.jihe.net     Honey Due Melon Watermelon Tomato         Towel Gourd Cucumber Banana Pepper     ]]> A Good Freeware for Recovering Lost Files / Pictures from Thumb Drives / CF / SD Cards tag:www.jihe.net,2008://1.135 2008-02-23T00:46:36Z 2008-02-23T00:50:19Z Recover Files is an award winning program that can undelete / recover deleted files after they have been deleted. Recover Files is a professional file recovery software that allows it's user to recover accidentally deleted files. Even files removed from... Ji He http://www.jihe.net Recover Files is an award winning program that can undelete / recover deleted files after they have been deleted.

Recover Files is a professional file recovery software that allows it's user to recover accidentally deleted files. Even files removed from the Recycle Bin, network drive, compact flash card, portable drives, in a DOS window, or from Windows Explorer with the SHIFT key held down.

Recover Files is a small, fast, useful, practical and powerful. It has a clean, simple interface. Recover Files will work with Windows 95, 98, Me, NT, 2000, XP, 2003, Vista operating systems. It can be used to recover deleted files from all NTFS and FAT partitions.

Link

]]> mian08analysis tag:www.jihe.net,2008://1.134 2008-01-18T17:25:39Z 2008-09-12T19:36:17Z MA Rouf Mian, Yan Zhang, Zeng-Yu Wang, Ji-Yi Zhang, Xiaofei Cheng, Lei Chen, Konstantin Chekhovskiy, Xinbin Dai, Chunhong Mao, Foo Cheung, Xuechun Zhao, Ji He, Angela D Scott, Christopher D Town and Gregory D May. “Analysis of tall fescue ESTs... Ji He http://www.jihe.net MA Rouf Mian, Yan Zhang, Zeng-Yu Wang, Ji-Yi Zhang, Xiaofei Cheng, Lei Chen, Konstantin Chekhovskiy, Xinbin Dai, Chunhong Mao, Foo Cheung, Xuechun Zhao, Ji He, Angela D Scott, Christopher D Town and Gregory D May. “Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages”. BMC Plant Biology. 8:27, 2008.

BMC Open Access | PDF (517K) | BibTEX (mian08analysis)

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